Archive for April, 2009

Live Food at Google? Nope

Friday, April 24th, 2009

I ate lunch in the cafeteria of Google New York. Being monomanical, I was struck by the absence of fermented food. No kombucha, kefir, kimchi, pickles, wine, beer, natto, strong cheese, sauerkraut. Not even yogurt! (Of course there was vinegar at the salad bar and perhaps the meat was aged.) The absence was especially glaring given so much conventionally-healthy food: raw food, twenty kinds of vegetables, fruit, fish, diet sodas, gazpacho, sugar-free jello . . . I am sorry to predict those talented Googlers will be sicker than necessary.

Previous visit.

The Yogurt Prize: Who Gets It Most Wrong?

Friday, April 24th, 2009

A vast scientific literature shows the positive effects of probiotic foods such as yogurt and natto. What book most completely ignores that literature?

Practically all popular nutrition books ignore it, but some more egregiously than others. (Just as in Animal Farm, some animals were more equal than others.) I’ve decided to give the Yogurt Prize to the worst offender.

The first winner of the prize, I am pleased to announce, to be held until an even worse example comes along, is The Wellness Encyclopedia of Food & Nutrition: How to Buy, Store, and Prepare Every Variety of Fresh Food (1992) by Sheldon Margen and the editors of the University of California Berkeley Wellness Letter. The Wellness Letter has an advisory board of Berkeley professors. The book has the UC Berkeley stamp of approval. Although it has five pages on yogurt — contradicting the title — the book treats yogurt as the nutritional equivalent of milk, which is so clearly false.

The citation reads: “For putting its ignorance not only in the text but in the title of the book; for reflecting the ignorance of not just one person but a whole team of writers; for being created under an advisory board of distinguished professors; and for carrying the stamp of a world-renowned research university.”

Would You Rather Have Lice or Eat Yogurt?

Friday, April 24th, 2009

Research on mice shows that those carrying the most lice had calmer immune systems than uninfested rodents, and they [the researchers, not the mice!] said their finding may have implications for studying the causes of asthma and allergies in people.

From Reuters. The research paper. The data analysis is much better than usual. Among its strengths are: 1. Graphs of main points. 2. Transformation of variables. 3. Principal components analysis.

This study is more evidence that a high level of foreign substances in our body to which the immune system responds is beneficial. The researchers say nothing about fermented foods, which are an easy and easy-to-control way to ingest such substances. It’s hard to vary your dose of lice but easy to vary how much yogurt you eat.

Thanks to Oskar Pearson.

Trouble in Mouse Animal-Model Land

Thursday, April 23rd, 2009

Most drugs are first tested on animals, often on “animal models” of the human disease at which the drug is aimed. This 2008 Nature article reveals that in at least one case, the animal model is flawed in a way no one really understands:

In the case of ALS, close to a dozen different drugs have been reported to prolong lifespan in the SOD1 mouse, yet have subsequently failed to show benefit in ALS patients. In the most recent and spectacular of these failures, the antibiotic minocycline, which had seemed modestly effective in four separate ALS mouse studies since 2002, was found last year to have worsened symptoms in a clinical trial of more than 400 patients.

I think that “close to a dozen” means about 12 in a row, rather than 12 out of 500. The article is vague about this. A defender of the mouse model said this:

As for the failed clinical trial of minocycline, Friedlander suggests that the drug may have been given to patients at too high a dose — and a lower dose might well have been effective. “In my mind, that was a flawed study,” he says.

Not much of a defense.

That realization is spreading: some researchers are coming to believe that tests in mouse models of other neurodegenerative conditions such as Alzheimer’s and Huntington’s may have been performed with less than optimal rigor. The problem could in principle apply “to any mouse model study, for any disease”, says Karen Duff of Columbia University in New York, who developed a popular Alzheimer’s mouse model.

“Less than optimal rigor”? Oh no. Many scientists seem to believe that every problem is due to failure to follow some rules they read in a book somewhere. They have no actual experience testing this belief (which I’m sure is false — the world is a lot more complicated than as described in their textbooks); they just feel good criticizing someone else’s work like that. In this case, the complaints include “small sample sizes, no randomization of treatment and control groups, and [no] blinded evaluations of outcomes.” Very conventional criticisms.

Here’s a possibility no one quoted in the article seems to realize: The studies were too rigorous, in the sense that the two groups (treatment and control) were too similar prior to getting the treatment. These studies always try to reduce noise. A big source of noise, for example, is genetic variability. The less variability in your study, however, the less likely your finding will generalize, that is, be true in other situations. The Heisenberg Uncertainty Principle of experimental design. Not in any textbook I’ve seen.

In the 1920s and 30s, a professor in the UC Berkeley psychology department named Robert Tryon tried to breed rats for intelligence. His measure of intelligence was how fast they learned a maze. After several generations of selective breeding he derived two strains of rats, Maze Bright and Maze Dull, which differed considerably in how fast they learned the maze. But the maze-learning differences between these two groups didn’t generalize to other learning tasks; whatever they were bred for appeared to be highly specific to maze learning. The measure of intelligence lacked enough variation. It was too rigorous.

When an animal model fails, self-experimentation looks better. With self-experimentation you hope to generalize from one human to other humans, rather from one genetically-narrow group of mice to humans.

Thanks to Gary Wolf.

Trying to Buy Expired Food

Wednesday, April 22nd, 2009

I couldn’t resist. Shopping for kefir, I found a bottle two weeks past its sell-by date. Being the only person in the world who believes expired food is better than non-expired food, I thought it would be fun to see if I could get a discount. After all, it’s going to be thrown away.

Nope. “I’d rather not sell it to you,” said the store manager. “We can get a refund for these.” He apologized, took it, and I had to buy a non-expired bottle.